Maestro Cluster
Overview
Initializing search
Gitlab
Maestro Cluster
Gitlab
Getting Started
Getting Started
Overview
Concepts Required to Understand the Cluster
How to Request an Account
How to Join the Cluster Users Mailing List
Acknowledgments & Grant Applications
Daily Use & Job Management
Daily Use & Job Management
Overview
Main Job Commands (sbatch, srun, scancel, squeue, etc.)
Main Job Commands (sbatch, srun, scancel, squeue, etc.)
Overview
srun / salloc / sbatch to Submit Jobs
squeue & sprio to Monitor Jobs
sacct Check State & Resource Usage of Ended Jobs
sacctmgr to Display Association or QoS Characteristics
scontrol to Update, Hold, or Release Pending Jobs
scancel to Cancel One or More Jobs
Requesting and Adjusting Resources
Requesting and Adjusting Resources
Overview
reportseff Generate Resource Usage Reports
Running Specific Workloads
Running Specific Workloads
How to Run MPI Programs
How to Submit Jobs on GPU Nodes
How to Submit Jobs on GPU Nodes
Overview
Monitor Multiple Jobs on the Same GPU Node
Using Tools with GUI
Using Tools with GUI
Prerequisites
Temporary File Locations
Temporary File Locations
Where to Write Temporary Files
Choosing the Right Partition/QoS
Choosing the Right Partition/QoS
Which Partition/QoS for Which Type of Computation
Troubleshooting & Monitoring
Troubleshooting & Monitoring
Overview
How to Monitor a Program on a Node
Silent Errors (No Output or Error Files)
Advanced Usage
Advanced Usage
Overview
Containers (Apptainer/Singularity)
Containers (Apptainer/Singularity)
Containers on Maestro
Gensoft Packages for Docker & Singularity
How to Create a Disconnection-Proof Interactive Session
Compiling & Profiling Code
Compiling & Profiling Code
Overview
Profiling Code on the Cluster
Linear Algebra Library Benchmarks on Maestro
Installing Libraries & Tools
Installing Libraries & Tools
Overview
Installing Perl Libraries
Installing Python Packages
Installing Python Packages
Overview
Installing pybedtools
Installing R Packages
Installing R Packages
Overview
Installing gdal
R and the GPU
Tools & Software
Tools & Software
Overview
How to Run Specific Tools
How to Run Specific Tools
Overview
Bracken
Gromacs
Guppy on GPU
HOPS Pipeline
Alphafold
Alphafold 3
ATAC-Seq Pipeline
ColabFold
CryoSPARC
fasterq-dump
RoseTTAFold
RoseTTAFold2NA
CLC Genomics Workbench & Assembly Cell
Jupyter Notebook
MATLAB
MATLAB
Overview
Using MatConvNet
Java Programs
Megahit
Mmseqs
Nextflow
Snakemake
Module System
Module System
Overview
English Version
English Version
Overview
Basic User Guide
Advanced User Guide
Whatprovides (English)
French Version
French Version
Overview
Pourquoi Module
Utilisation Basique
Utilisation Avancée
Utilisation de Whatprovides
Requesting New Software
Storage & Data Management
Storage & Data Management
Overview
Storage Available on the Cluster
Free Space Check
Data Sharing on $SCRATCH
Internet Access
Internet Access
Internet Access on Maestro
Technical Information
Technical Information
Overview
How to Retrieve Technical Info (Nodes, OS, Storage)
Dedicated partitions
Useful Resources
Useful Resources
List of All Tools and Programs
Overview
Gensoft is great